diff --git a/pre_commit/languages/r.py b/pre_commit/languages/r.py index d573775f..74ecc6a8 100644 --- a/pre_commit/languages/r.py +++ b/pre_commit/languages/r.py @@ -54,6 +54,12 @@ def _prefix_if_non_local_file_entry( path = prefix.path(entry[1]) return (path,) +def _rscript_exec(): + """ + When invoked in a sub-process of R, use full path + """ + return os.path.join(os.getenv('R_HOME', ""), 'Rscript') + def _entry_validate(entry: Sequence[str]) -> None: """ @@ -95,8 +101,9 @@ def install_environment( os.makedirs(env_dir, exist_ok=True) shutil.copy(prefix.path('renv.lock'), env_dir) shutil.copytree(prefix.path('renv'), os.path.join(env_dir, 'renv')) + cmd_output_b( - 'Rscript', '--vanilla', '-e', + _rscript_exec(), '--vanilla', '-e', f"""\ prefix_dir <- {prefix.prefix_dir!r} options( @@ -130,7 +137,7 @@ def install_environment( if additional_dependencies: with in_env(prefix, version): cmd_output_b( - 'Rscript', *RSCRIPT_OPTS, '-e', + _rscript_exec(), *RSCRIPT_OPTS, '-e', 'renv::install(commandArgs(trailingOnly = TRUE))', *additional_dependencies, cwd=env_dir,